PDB Newsletter
Number 19 Fall 2003 Published quarterly by the Protein Data Bank

Previous editions of the PDB Newsletter are available here Text-only version PDF version

October 1, 2003

22,700 Released atomic coordinate entries

Molecule Type

  • 20,501 proteins, peptides, and viruses
  • 1,233 nucleic acids
  • 948 protein/nucleic acid complexes
  • 18 carbohydrates

Experimental Technique

  • 19,285 diffraction and other
  • 10,652 structure factor files
  • 3,415 NMR
  • 1,697 NMR restraint files

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Message from the PDB

Data Deposition and Processing

PDB Deposition Statistics Since the beginning of the year, approximately 3,500 structures have been deposited to the PDB... [MORE...]

New Summary Report Available from TargetDB TargetDB (targetdb.pdb.org) is a database of registration and tracking information for structural genomics centers worldwide. TargetDB provides timely status and tracking information on the progress of the production and solution of structures.... [MORE...]

Data Query, Reporting, and Access

New Features on the PDB Web Site and FTP Archives During this past quarter, several new developments that were previously in beta test have been incorporated into the primary PDB web site, its mirrors, and on the PDB FTP site... [MORE...]

New Version of OpenMMS Toolkit Released Version 1.5.1 of the OpenMMS software toolkit is now available on the OpenMMS website... [MORE...]

PDB Focus: Using rsync to Mirror the PDB FTP Site One freely available method for establishing and maintaining a local copy of the PDB FTP Site is rsync. The RCSB-created script, rsyncPDB.sh, is a template for using rsync to mirror the FTP archive... [MORE...]

PDB Web Site Statistics

PDB Outreach

PDB at the ISMB, ACA, and Protein Society Meetings PDB staff members participated in several meetings this summer. We received excellent feedback from those in attendance at these events, which will help to guide PDB's future developments... [MORE...]

PDB Poster Prize -- 2003 Winners Announced The PDB Poster Prize was awarded to the best student poster presentation at this year's meetings of the IUCr Regional Associates--the American Crystallographic Association (ACA), the Asian Crystallographic Association (AsCA), and the European Crystallographic Association (ECA/ECM)... [MORE...]

PDB Art Part of Molecular Gallery Show at Cal State Fullerton The PDB's traveling art exhibit is part of the "Art of Science" show at California State University, Fullerton... [MORE...]

Illustrations of "Macrophage and Bacterium" by Goodsell Win Award in NSF/Science Visualization Contest PDB contributor and author of the "Molecule of the Month" series, David S. Goodsell, has been awarded second prize in the 2003 Science and Engineering Visualization Challenge for his illustration "Macrophage and Bacterium 2,000,000X"... [MORE...]

PDB Education Listserv A listserv for educators who use the PDB has been established by Dr. Judith Voet, Professor of Biochemistry at Swarthmore College and member of the PDB Advisory Committee. The purpose of this forum is to provide the PDB with feedback on its present usability by students and educators, and ideas for future directions in support of education... [MORE...]

PDB Molecules of the Quarter: Src Tyrosine Kinase, Calmodulin, and Estrogen Receptor

PDB Community Focus: Brian W. Matthews

PDB Education Corner

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RCSB PDB Members & Statement of Support

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