Month | Unique Visitors | Visits | Bandwidth |
---|---|---|---|
July 2020 | 707,006 | 2,553,617 | 10566.80 GB |
August 2020 | 682,088 | 2,162,671 | 4080.59 GB |
September 2020 | 686,187 | 2,285,846 | 2679.69 GB |
Protein Feature View visually maps a PDB chain (or "instance") to corresponding sequences from UniProtKB and annotations from external resources in different "tracks" to enable explorations of structural and biological features.
This tool integrates
The Macromolecules section on a Structure Summary Page provides a truncated Protein Feature View. Selecting the Sequence tab launches the expanded view for the structure.
Protein Feature View also maps a UniProt sequence to all corresponding structures in the PDB. Access this feature from the Macromolecules section on a Structure Summary Page or enter the UniProt ID in the URL rcsb.org/uniprot/. Visit the Help Documentation for complete details.
RCSB PDB has integrated PDB structural information with three NIH Common Fund Data Resources. Ultimately, this integration is expected to enable investigation of novel biological questions, and promote a more complete understanding of human health and disease.
Data are accessible from individual Structure Summary pages and Advanced Search.
This work was supported by an NIH Common Fund Data Use Award intended for Enhancing Utility and Usage of Common Fund Data Sets.
Use the Advanced Search>Chemical Search option to find chemical components (standard and modified amino acids/nucleotides, and ligands) by Formula (exact match or portion) or SMILES or InChi descriptor (graph-relaxed, graph-relaxed-stereo, graph-strict, fingerprint-similarity). A description of this functionality is available.
Advanced Search Query Builder can be used combine these Chemical Searches with other types of searches using Boolean operators (AND/OR/NOT):
The Attribute search can be used to find Chemical Components based on Name, Synonyms, Chemical Component Type, InChiKey, Molecular Weight, Atom Count, eternal database IDs, and binding affinity.
Advanced Search results can be returned as PDB structures, polymer entities, assemblies, or non-polymer entities that correspond to the search performed.
Small molecules in the PDB are described in the wwPDB Chemical Component Dictionary.
Recent improvements to RCSB.org include revised and updated tools for searching and exploring PDB data. As a result, select RCSB PDB Services are being replaced or retired.
MyPDB accounts allow users to save search queries, rerun saved search queries, and receive email notifications when new structures matching saved queries are released.
To utilize the new and improved MyPDB features, users should generate a new MyPDB account using third-party authentication (Google, Facebook, or ORCID).
Legacy MyPDB users are encouraged to generate new MyPDB accounts. Legacy email notifications have been discontinued.
Recently-introduced Search and Data APIs offer comprehensive functionality and high performance. As a result, legacy RCSB PDB APIs (REST search and fetch) will be discontinued in November 2020.
Documentation is available to help users learn the concepts and syntax behind the new services. Use this documentation to display all of the details of a specific API request, and then run the search request and to see the response.
Structure Summary Pages and Search Results have been refreshed with new images created using Mol*, the new 3D visualization tool. Any links to legacy images were retired. Users should update URLs to new images (e.g., http://cdn.rcsb.org/images/structures/lu/6lu7/6lu7_assembly-1.jpeg) before that date.