Published quarterly by the Research Collaboratory
for Structural Bioinformatics Protein Data Bank

Spring 2010
Number 45

 
NEWSLETTER
  Contents  
Home | Newsletter Archive | PDF Version
Message from the RCSB PDB
Data Deposition
Deposition Statistics
wwPDB News: Changes to the wwPDB Policy for Depositing Polypeptide Structures
wwPDB News: Initial Release REVDAT Dates
Data Query, Reporting and Access
Website Statistics
Improved Ligand Searching
Comparison Tool for Exploring Sequence and Structure Alignments
Advanced Search: Sequence Motif
Time-stamped Copies of PDB Archive Available via FTP
Outreach and Education
Online Narrated Tutorial Demonstrates How to Use the RCSB PDB
Poster Download: How Do Drugs Work?
NJ Science Olympiad Protein Modeling Results
Recent and Upcoming Meetings and Events
Education Corner
Robert C. Bateman, Jr. and Paul A. Craig: A Proficiency Rubric for Biomacromolecular 3D Literacy
RCSB PDB PARTNERS, MANAGEMENT, AND STATEMENT OF SUPPORT
 
       

Message from the RCSB PDB

In March, many new features were added to the website, including improved ligand search options, pre-calculated pairwise structure alignments, enhancements to viewing query results and tabular reports, and much more.

New Features WidgetAn overview can be found in the New Features Widget box on the home page. This widget scrolls through a list of the new features, and links to descriptions of all recent major website additions.

All widgets with a dark blue bar on top can be moved around on the page by dragging the arrow buttons, hidden by selecting "Hide," or included in a customized view.

The button in the top right corner lets users select which widgets are displayed by default. To only see query-related options, the Molecule of the Month can be replaced with forms to download files and search by sequence.

Other widgets that can be displayed on the home page include the RCSB PDB Comparison Tool for running pairwise structural and sequence alignments, the ADIT Deposition Widget, and the Featured Molecule Widget which displays the RCSB PDB's Molecule of the Month and the Protein Structure Initiative's Featured Molecule.

 
Snapshot: April 1, 2010
64357 released atomic coordinate entries
Molecule Type
59564
proteins, peptides,
and viruses
2124
nucleic acids
2631
protein/nucleic acid
complexes
38
other
Experimental Technique
55596 X-ray
8316
NMR
283
electron microscopy
21
hybrid
141
other
 
44986
structure factor files
5607
NMR restraint files
 



This example shows the RCSB PDB home page customized to show the Download Files and Sequence Search widgets in the middle. The ADIT Deposition widget, which lets users start or continue a new deposition session, appears on the right. Other widgets can be set to appear at the bottom of the page or simply hidden.

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