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Published quarterly by the Research Collaboratory
for Structural Bioinformatics Protein Data Bank
Spring 2013
Number 57

NEWSLETTER

Snapshot: April 1, 2012

89212 released atomic coordinate entries

Molecule Type

82570 proteins, peptides,
and viruses

2520 nucleic acids

4099 protein/nucleic acid complexes

23 other

Experimental Technique

78608 X-ray

9869 NMR

514 Electron Microscopy

52 Hybrid

169 Other

Related Experimental Data Files

68096 structure factors

7178 NMR restraints

936 NMR chemical shifts


April's Molecule of the Month looks at the BIRD molecule actinomycin

Mesage from the RCSB PDB

New and enhanced features have been added to the RCSB PDB, including:

  • The Simple Search available from the top menu bar has a cleaner and simpler look and feel. The search form offers the same search suggestion capabilities.
  • A new Browse Database option can be used to find structures using the Anatomical Therapeutic Chemical (ATC) Classification System for drugs from the WHO Collaborating Centre for Drug Statistics Methodology.
  • Jmol pages now include an updated Display Options menu, new scripting options, tabs for domains and ligands, and the JavaScript beta version of Jmol.
  • Information about protein stoichiometry and symmetry have been integrated into drill down charts and Advanced Search. Symmetry features can be highlighted in Jmol.
  • Options to search, view annotations, and visualize about the peptide-like antibiotic and inhibitor molecules described in the wwPDB's Biologically Interesting molecule Reference Dictionary.
See the What's New page for more new features and examples.

Protein Workshop view of vancomycin PRD_000204 as seen in PDB ID 1pnv.

PDB-101 has new tabs for easier access to Educational Materials, Molecule of the Month, Understanding PDB Data, and Author Profiles. PDB-101 News has been added.